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PDBsum entry 5d2a
Go to PDB code:
Ligand/metal interactions
PDB id
5d2a
Ligand highlighted
ALA-PRO-ALA-LYS-
PHE-CYS
Ligands
ALA-PRO-ALA-LYS-
PHE-CYS
ALA 1(C) to CYS 7(C)
ALA-PRO-ALA
×2
ALA 2(D) to ALA 4(D)
PHB-GAL
PHB 101(C) to GAL 102(C)
ZDC
×2
ZDC 101(D)
Metals
_CA
×4
CA 202(A)
CA 201(A)
Ligand
ALA-PRO-ALA-LYS-PHE-CYS
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ALA 1(C)
6
-
-
-
-
-
-
-
-
-
PRO 2(C)
8
8
1
1
0
0
0
0
0
0
ALA 3(C)
6
-
-
-
-
-
-
-
-
-
LYS 5(C)
10
10
1
1
0
0
0
0
0
0
PHE 6(C)
12
12
1
1
0
0
0
0
0
0
CYS 7(C)
7
6
0
0
1
0
-
-
-
-
Advanced Analysis
Residue
Name Mismatches
Count
ALA 1(C)
-
0
PRO 2(C)
-
0
ALA 3(C)
-
0
LYS 5(C)
-
0
PHE 6(C)
-
0
CYS 7(C)
O: OXT
1
Additional Information
Validation carried out using
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3D Viewers:
LIGPLOT
of interactions involving ligand ALA-PRO-ALA-LYS-PHE-CYS
List of
interactions
ALA 1(C) to CYS 7(C)
_CA
×4
