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PDBsum entry 5d1c
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Ligand/metal interactions PDB id
5d1c
2 instances of ligand highlighted
ACE-ARG-HIS-ALY-
ALY-MCM
Ligands
ACE-ARG-HIS-ALY-
ALY-MCM ×2
ACE 1(C) to MCM 6(C)
GOL
GOL 404(B)
Metals
_ZN ×2
ZN 403(A)
__K ×4
K 401(A)
K 402(A)
  
Ligand ACE-ARG-HIS-ALY-ALY-MCM

ACE - Acetyl group Formula: C2H4O
ALY - N(6)-Acetyllysine Formula: C8HNN2O3
MCM - 7-Amino-4-Methyl-Chromen-2-One [7-Amino-4-Methylcoumarin] Formula: C10H9NO2
Validation of ligand annotation
Per Residue Validation
Atoms Missing Incorrect Chiral Centres
Residue Dic. Struc. Link Subs. Atoms Rings Planar High C Other
ACE 1(C) 3 - - - Residue too small to validate
ARG 2(C) 12 12 1 1 Complete Chiral checks - OK
HIS 3(C) 11 11 1 1 Complete Chiral checks - OK
ALY 4(C) 13 13 1 1 Complete Chiral checks - OK
ALY 5(C) 13 13 1 1 Complete Chiral checks - OK
MCM 6(C) 13 13 0 0 Complete Chiral checks - OK
Advanced Analysis
Residue Name Mismatches Count
ACE 1(C) - 0
ARG 2(C) - 0
HIS 3(C) - 0
ALY 4(C) - 0
ALY 5(C) O: OXT 1
MCM 6(C) - 0
Additional Information
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Het Group ACE matches this enzyme's product acetate with similarity 75.00%


LIGPLOT of interactions involving ligand ACE-ARG-HIS-ALY-ALY-MCM

JSmol




List of
interactions
 

ACE 1(C) to MCM 6(C)

(also representing equivalent ligand ACE 1(D) to MCM 6(D) )
  
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