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PDBsum entry 5c0c
Go to PDB code:
Ligand/metal interactions
PDB id
5c0c
2 instances of ligand highlighted
ARG-GLN-PHE-GLY-
PRO-ASP-TRP-ILE-
VAL-ALA
Ligands
ARG-GLN-PHE-GLY-
PRO-ASP-TRP-ILE-
VAL-ALA
×2
ARG 1(C) to ALA 10(C)
EDO
×33
EDO 301(A)
EDO 302(A)
EDO 303(A)
EDO 301(B)
EDO 302(B)
EDO 301(D)
EDO 302(D)
EDO 303(D)
EDO 301(E)
EDO 302(E)
EDO 303(E)
EDO 304(E)
EDO 305(E)
EDO 306(E)
EDO 302(F)
EDO 303(F)
EDO 304(F)
EDO 305(F)
EDO 102(G)
EDO 301(I)
EDO 302(I)
EDO 303(I)
EDO 303(J)
EDO 304(J)
EDO 305(J)
EDO 306(J)
PG4
×2
PG4 304(A)
PG4 304(I)
SO4
×4
SO4 305(A)
SO4 308(J)
SO4 309(J)
SO4 310(J)
GOL
×3
GOL 303(B)
GOL 308(F)
GOL 309(F)
Ligand
ARG-GLN-PHE-GLY-PRO-ASP-TRP-ILE-VAL-ALA
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ARG 1(C)
12
12
1
1
Complete
Chiral checks - OK
GLN 2(C)
10
10
1
1
Complete
Chiral checks - OK
PHE 3(C)
12
12
1
1
Complete
Chiral checks - OK
GLY 4(C)
5
-
-
-
Residue too small to validate
PRO 5(C)
8
8
1
1
Complete
Chiral checks - OK
ASP 6(C)
9
9
1
1
Complete
Chiral checks - OK
TRP 7(C)
15
15
1
1
Complete
Chiral checks - OK
ILE 8(C)
9
9
1
1
Complete
Chiral checks - OK
VAL 9(C)
8
8
1
1
Complete
Chiral checks - OK
ALA 10(C)
6
-
-
-
Residue too small to validate
Advanced Analysis
Residue
Name Mismatches
Count
ARG 1(C)
O: OXT
1
GLN 2(C)
O: OXT
1
PHE 3(C)
-
0
GLY 4(C)
-
0
PRO 5(C)
-
0
ASP 6(C)
OD2: OD1
|
OD1: OD2
|
O: OXT
3
TRP 7(C)
O: OXT
1
ILE 8(C)
-
0
VAL 9(C)
-
0
ALA 10(C)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Nothing to show in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand ARG-GLN-PHE-GLY-PRO-ASP-TRP-ILE-VAL-ALA
List of
interactions
ARG 1(C) to ALA 10(C)
(also representing equivalent ligand ARG 1(H) to ALA 10(H) )
