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PDBsum entry 5axi
Go to PDB code:
Ligand/metal interactions
PDB id
5axi
Ligand highlighted
ASP-GLY-PTR-MET-
PRO
Ligands
ASP-GLY-PTR-MET-
PRO
ASP 1(E) to PRO 5(E)
Metals
_CL
×4
CL 404(A)
CL 402(B)
CL 402(A)
_CA
×3
CA 401(C)
CA 401(B)
Ligand
ASP-GLY-PTR-MET-PRO
-
O-Phosphotyrosine
[Phosphonotyrosine]
Formula:
C
9
H
12
NO
6
P
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ASP 1(E)
9
9
1
1
Complete
Chiral checks - OK
GLY 2(E)
5
-
-
-
Residue too small to validate
PTR 3(E)
17
17
1
1
Complete
Chiral checks - OK
MET 4(E)
9
9
1
1
Complete
Chiral checks - OK
PRO 5(E)
8
8
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
ASP 1(E)
O: OXT
1
GLY 2(E)
-
0
PTR 3(E)
O3P: O1P
|
O1P: O2P
2
MET 4(E)
-
0
PRO 5(E)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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LIGPLOT
of interactions involving ligand ASP-GLY-PTR-MET-PRO
List of
interactions
ASP 1(E) to PRO 5(E)
_CL
×4
_CA
×3
