PDBsum entry 4zof

Ligand/metal interactions

PDB id

4zof


	2 instances of ligand highlighted
	PRP

Ligands

PRP ×2

PRP 402(A)

59L ×2

59L 403(A)

IMD

IMD 404(A)

PO4

PO4 404(B)

Metals

_MG ×4

MG 400(A)

MG 401(A)

Ligand PRP - 1-O-Pyrophosphono-5-O-Phosphono-Alpha-D-Ribofuranose
[Alpha-Phosphoribosylpyrophosphoric acid; 1-O-
Pyrophosphono-5-O-Phosphono-Alpha-D-Ribose; 1-O-
Pyrophosphono-5-O-Phosphono-D-Ribose; 1-O- Pyrophosphono-
5-O-Phosphono-Ribose]
Formula: C₅H₁₃O₁₄P₃

Validation of ligand annotation

Per Residue Validation

	Atoms				Missing		Incorrect Chiral Centres
Residue	Dic.	Struc.	Link	Subs.	Atoms	Rings	Planar	High	C	Other
PRP 402(A)	22	22	0	0	0	0	0	1	0	0

Advanced Analysis

Residue	Name Mismatches	Count
PRP 402(A)	O2A: O1A\|O1A: O2A\|O2B: O1B\|O1B: O3B	4

Additional Information

Validation carried out using MotiveValidator. Full validation report can be found in Validator^DB.

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Ligand matches this enzyme's reactant diphosphate with similarity 40.91%

LIGPLOT of interactions involving ligand PRP

List of
interactions

PRP 402(A)

(also representing equivalent ligand PRP 402(B) )