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PDBsum entry 4zkl
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Ligand/metal interactions
PDB id
4zkl
Ligand highlighted
AMP-JB6
Ligands
AMP-JB6
AMP 201(B) to JB6 202(B)
AMP
AMP 201(D)
Ligand
AMP-JB6
AMP
-
Adenosine monophosphate
Formula:
C
10
H
14
N
5
O
7
P
JB6
-
(2r,3r,4s,5r)-2-(6-Aminopurin-9-Yl)-5-[2-[[(2s)-3- [[(2r,3s,4r,5r)-5-(6-Aminopurin-9-Yl)-3,4- Bis(oxidanyl)oxolan-2-Yl]methoxy-Sulfanyl- Phosphoryl]oxy-2-Oxidanyl-Propoxy]-Sulfanyl- Phosphoryl]oxyethyl]oxolane-3,4-Diol
Formula:
C
24
H
34
N
10
O
13
P
2
S
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
AMP 201(B)
23
23
0
0
0
0
0
0
0
0
JB6 202(B)
51
-
-
-
-
-
-
-
-
-
Advanced Analysis
Residue
Name Mismatches
Count
AMP 201(B)
O2P: O1P
|
O1P: O3P
2
JB6 202(B)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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of interactions involving ligand AMP-JB6
List of
interactions
AMP 201(B) to JB6 202(B)
