PDBsum entry 4zah

Ligand/metal interactions

PDB id

4zah


	8 instances of ligand highlighted
	T5K

Ligands

T5K ×8

T5K 500(A)

Ligand T5K - [[(2r,3s,5r)-5-[5-Methyl-2,4-Bis(oxidanylidene) pyrimidin-
1-Yl]-3-Oxidanyl-Oxolan-2-Yl]methoxy- Oxidanyl-
Phosphoryl] [(2r,3r,4s,5r,6r)-6-Methyl-5- [(E)-[2-Methyl-3-
Oxidanyl-5-(Phosphonooxymethyl) pyridin-4-
Yl]methylideneamino]-3,4-Bis(oxidanyl)oxan- 2-
Yl] hydrogen phosphate
Formula: C₂₄H₃₅N₄O₁₉P₃

Validation of ligand annotation

Per Residue Validation

	Atoms				Missing		Incorrect Chiral Centres
Residue	Dic.	Struc.	Link	Subs.	Atoms	Rings	Planar	High	C	Other
T5K 500(A)	50	50	0	0	Complete		Chiral checks - OK

Additional Information

Validation carried out using MotiveValidator. Full validation report can be found in Validator^DB.

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Ligand matches this enzyme's product dTDP-4-dehydro-6-deoxy-alpha-D-glucose with similarity 66.67%

LIGPLOT of interactions involving ligand T5K

List of
interactions

T5K 500(A)

also representing 7 other equivalent ligands:
T5K 500(B)
T5K 500(C)
T5K 500(D)
T5K 500(E)
T5K 500(F)
T5K 500(G)
T5K 500(H)