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PDBsum entry 4z7q
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Ligand/metal interactions PDB id
4z7q
2 instances of ligand highlighted
ALA-GLY-ASP-VAL-
NH2
Ligands
ALA-GLY-ASP-VAL-
NH2 ×2
ALA 408(G) to NH2 412(G)
NAG-NAG-BMA-MAN-
MAN
NAG 1(J) to MAN 5(J)
NAG-NAG ×2
NAG 1(K) to NAG 2(K)
NAG-NAG-BMA
NAG 1(M) to BMA 3(M)
SO4 ×7
SO4 505(A)
SO4 506(A)
SO4 507(A)
SO4 506(C)
SO4 508(C)
SO4 301(L)
GOL
GOL 508(A)
NAG ×2
NAG 2004(B)
MAN
MAN 505(C)
Metals
_CL
CL 509(C)
_MN ×6
MN 509(D)
MN 2002(B)
MN 502(D)
_CA ×8
CA 501(A)
CA 502(A)
CA 503(A)
CA 504(A)
  
Ligand ALA-GLY-ASP-VAL-NH2 - Amino group
Formula: HnN
Validation of ligand annotation
Per Residue Validation
Atoms Missing Incorrect Chiral Centres
Residue Dic. Struc. Link Subs. Atoms Rings Planar High C Other
ALA 408(G) 6 - - - Residue too small to validate
GLY 409(G) 5 - - - Residue too small to validate
ASP 410(G) 9 9 1 1 Complete Chiral checks - OK
VAL 411(G) 8 8 1 1 Complete Chiral checks - OK
NH2 412(G) 1 - - - Residue too small to validate
Advanced Analysis
Residue Name Mismatches Count
ALA 408(G) - 0
GLY 409(G) - 0
ASP 410(G) - 0
VAL 411(G) O: OXT 1
NH2 412(G) - 0
Additional Information
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LIGPLOT of interactions involving ligand ALA-GLY-ASP-VAL-NH2

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List of
interactions
 

ALA 408(G) to NH2 412(G)

(also representing equivalent ligand ALA 408(I) to NH2 412(I) )
  
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