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PDBsum entry 4z78
Go to PDB code:
Ligand/metal interactions
PDB id
4z78
3 instances of ligand highlighted
LEU-TYR-LEU-VAL-
CYS-GLY-GLU-ARG-
GLY-PHE
Ligands
LEU-TYR-LEU-VAL-
CYS-GLY-GLU-ARG-
GLY-PHE
×3
LEU 1(C) to PHE 10(C)
EDO
×5
EDO 301(A)
EDO 302(A)
EDO 303(A)
EDO 301(D)
EDO 301(H)
GOL
×6
GOL 304(A)
GOL 305(A)
GOL 302(D)
GOL 101(E)
GOL 302(H)
GOL 303(H)
SO4
×9
SO4 306(A)
SO4 307(A)
SO4 308(A)
SO4 309(A)
SO4 303(D)
SO4 304(D)
SO4 305(D)
SO4 301(G)
Ligand
LEU-TYR-LEU-VAL-CYS-GLY-GLU-ARG-GLY-PHE
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
LEU 1(C)
9
9
1
1
Complete
Chiral checks - OK
TYR 2(C)
13
13
1
1
Complete
Chiral checks - OK
LEU 3(C)
9
9
1
1
Complete
Chiral checks - OK
VAL 4(C)
8
8
1
1
Complete
Chiral checks - OK
CYS 5(C)
7
7
1
1
Complete
Chiral checks - OK
GLY 6(C)
5
-
-
-
Residue too small to validate
GLU 7(C)
10
10
1
1
Complete
Chiral checks - OK
ARG 8(C)
12
12
1
1
Complete
Chiral checks - OK
GLY 9(C)
5
-
-
-
Residue too small to validate
PHE 10(C)
12
12
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
LEU 1(C)
O: OXT
1
TYR 2(C)
-
0
LEU 3(C)
O: OXT
1
VAL 4(C)
-
0
CYS 5(C)
-
0
GLY 6(C)
-
0
GLU 7(C)
OE2: OE1
|
OE1: OE2
|
O: OXT
3
ARG 8(C)
-
0
GLY 9(C)
-
0
PHE 10(C)
OXT: O
|
O: OXT
2
Additional Information
Validation carried out using
MotiveValidator
. Nothing to show in
Validator
DB
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3D Viewers:
LIGPLOT
of interactions involving ligand LEU-TYR-LEU-VAL-CYS-GLY-GLU-ARG-GLY-PHE
List of
interactions
LEU 1(C) to PHE 10(C)
also representing 2 other equivalent ligands:
LEU 1(F) to PHE 10(F)
LEU 1(I) to PHE 10(I)
