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PDBsum entry 4z77
Go to PDB code:
Ligand/metal interactions
PDB id
4z77
2 instances of ligand highlighted
LEU-TYR-LEU-VAL-
CYS-GLY-GLU-ARG-
VAL
Ligands
LEU-TYR-LEU-VAL-
CYS-GLY-GLU-ARG-
VAL
×2
LEU 1(C) to VAL 9(C)
GOL
×7
GOL 301(A)
GOL 302(A)
GOL 301(B)
GOL 302(B)
GOL 301(D)
GOL 302(D)
GOL 101(E)
15P
×3
15P 303(A)
15P 303(D)
15P 304(D)
EDO
×12
EDO 304(A)
EDO 305(A)
EDO 306(A)
EDO 303(B)
EDO 304(B)
EDO 305(B)
EDO 101(C)
EDO 307(D)
EDO 102(E)
EDO 103(E)
SO4
×6
SO4 307(A)
SO4 308(A)
SO4 308(D)
SO4 104(E)
SO4 105(E)
SO4 106(E)
Ligand
LEU-TYR-LEU-VAL-CYS-GLY-GLU-ARG-VAL
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
LEU 1(C)
9
9
1
1
Complete
Chiral checks - OK
TYR 2(C)
13
13
1
1
Complete
Chiral checks - OK
LEU 3(C)
9
9
1
1
Complete
Chiral checks - OK
VAL 4(C)
8
8
1
1
Complete
Chiral checks - OK
CYS 5(C)
7
7
1
1
Complete
Chiral checks - OK
GLY 6(C)
5
-
-
-
Residue too small to validate
GLU 7(C)
10
10
1
1
Complete
Chiral checks - OK
ARG 8(C)
12
12
1
1
Complete
Chiral checks - OK
VAL 9(C)
8
8
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
LEU 1(C)
O: OXT
1
TYR 2(C)
-
0
LEU 3(C)
-
0
VAL 4(C)
-
0
CYS 5(C)
O: OXT
1
GLY 6(C)
-
0
GLU 7(C)
OE2: OE1
|
OE1: OE2
2
ARG 8(C)
-
0
VAL 9(C)
-
0
Additional Information
Validation carried out using
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3D Viewers:
LIGPLOT
of interactions involving ligand LEU-TYR-LEU-VAL-CYS-GLY-GLU-ARG-VAL
List of
interactions
LEU 1(C) to VAL 9(C)
(also representing equivalent ligand LEU 1(F) to VAL 9(F) )
