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PDBsum entry 4y1c
Go to PDB code:
Ligand/metal interactions
PDB id
4y1c
Ligand highlighted
LYS-DIL-ASP-ASN-
45F-PRO
Ligands
LYS-DIL-ASP-ASN-
45F-PRO
LYS 1(C) to PRO 6(C)
SO4
×2
SO4 303(A)
Metals
_CD
×4
CD 301(A)
CD 302(A)
Ligand
LYS-DIL-ASP-ASN-45F-PRO
DIL
-
D-Isoleucine
Formula:
C
6
H
13
NO
2
45F
-
(4s)-4-(Prop-2-Yn-1-Yloxy)-L-Proline
Formula:
C
8
H
11
NO
3
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
LYS 1(C)
10
10
1
1
Complete
Chiral checks - OK
DIL 2(C)
9
9
1
1
Complete
Chiral checks - OK
ASP 3(C)
9
9
1
1
Complete
Chiral checks - OK
ASN 4(C)
9
9
1
1
Complete
Chiral checks - OK
45F 5(C)
12
12
1
1
Complete
Chiral checks - OK
PRO 6(C)
8
8
1
1
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
LYS 1(C)
-
0
DIL 2(C)
-
0
ASP 3(C)
-
0
ASN 4(C)
O: OXT
1
45F 5(C)
-
0
PRO 6(C)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand LYS-DIL-ASP-ASN-45F-PRO
List of
interactions
LYS 1(C) to PRO 6(C)
_CD
×4
