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PDBsum entry 4xop
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Ligand/metal interactions
PDB id
4xop
Ligand highlighted
NDG-NAG-GLA-GLC-
RAM-NAG-GLC
Ligands
NDG-NAG-GLA-GLC-
RAM-NAG-GLC
NDG 1(B) to GLC 6(B)
TRS
TRS 1008(A)
FMT
×5
FMT 1009(A)
FMT 1010(A)
FMT 1011(A)
FMT 1012(A)
FMT 1013(A)
Metals
_NA
×3
NA 1016(A)
NA 1014(A)
NA 1015(A)
Ligand
NDG-NAG-GLA-GLC-RAM-NAG-GLC
NDG
-
2-Acetamido-2-Deoxy-Alpha-D-Glucopyranose [N-Acetyl-Alpha-D-Glucosamine; 2-Acetamido-2-Deoxy- Alpha-D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2- Acetamido-2-Deoxy-Glucose; 2-(Acetylamino)-2-Deoxy-A- D-Glucopyranose]
Formula:
C
8
H
15
NO
6
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
GLA
-
Alpha-D-Galactopyranose [Alpha-D-Galactose; d-Galactose; galactose; alpha d- Galactose]
Formula:
C
6
H
12
O
6
GLC
-
Alpha-D-Glucopyranose [Alpha-D-Glucose; d-Glucose; glucose]
Formula:
C
6
H
12
O
6
RAM
-
Alpha-L-Rhamnopyranose [Alpha-L-Rhamnose; 6-Deoxy-Alpha-L-Mannopyranose; l- Rhamnose; rhamnose]
Formula:
C
6
H
12
O
5
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NDG 1(B)
15
15
0
0
Complete
Chiral checks - OK
NAG 1(B)
15
-
-
-
Complete
Chiral checks - OK
GLA 2(B)
12
12
1
0
Complete
Chiral checks - OK
GLC 3(B)
12
12
1
0
Complete
Chiral checks - OK
RAM 4(B)
11
11
1
0
Complete
Chiral checks - OK
NAG 5(B)
15
15
1
0
Complete
Chiral checks - OK
GLC 6(B)
12
12
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NDG-NAG-GLA-GLC-RAM-NAG-GLC
List of
interactions
NDG 1(B) to GLC 6(B)
_NA
×3
