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PDBsum entry 4x8o
Go to PDB code:
Ligand/metal interactions
PDB id
4x8o
2 instances of ligand highlighted
AP5
Ligands
AP5
×2
AP5 301(A)
Metals
_NA
NA 303(A)
_MG
×2
MG 302(B)
Ligand
AP5
-
Bis(adenosine)-5'-Pentaphosphate
Formula:
C
20
H
29
N
10
O
22
P
5
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
AP5 301(A)
57
57
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
AP5 301(A)
O2G: O1G
|
O1G: O2G
|
O2D: O1D
|
O1D: O2D
|
O2E: O1E...
6
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Ligand matches this enzyme's reactant ATP with similarity 54.39%
LIGPLOT
of interactions involving ligand AP5
List of
interactions
AP5 301(A)
(also representing equivalent ligand AP5 301(B) )
_NA
_MG
×2
