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PDBsum entry 4ukd
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Ligand/metal interactions
PDB id
4ukd
Ligand highlighted
ADP-UDP-BF2
Ligands
ADP-UDP-BF2
ADP 195(A) to BF2 501(A)
Metals
_MG
MG 500(A)
Ligand
ADP-UDP-BF2
ADP
-
Adenosine-5'-Diphosphate
Formula:
C
10
H
15
N
5
O
10
P
2
UDP
-
Uridine-5'-Diphosphate
Formula:
C
9
H
14
N
2
O
12
P
2
BF2
-
Beryllium difluoride
Formula:
BeF
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ADP 195(A)
27
27
0
0
0
0
0
1
0
0
UDP 196(A)
25
25
0
0
0
0
0
0
0
0
BF2 501(A)
3
-
-
-
-
-
-
-
-
-
Advanced Analysis
Residue
Name Mismatches
Count
ADP 195(A)
O2B: O1B
|
O1B: O3B
|
O2A: O1A
|
O1A: O2A
4
UDP 196(A)
O2A: O1A
|
O1A: O2A
|
O3B: O1B
|
O1B: O2B
4
BF2 501(A)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Het Group UDP corresponds to this enzyme's product UDP
LIGPLOT
of interactions involving ligand ADP-UDP-BF2
List of
interactions
ADP 195(A) to BF2 501(A)
_MG
