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PDBsum entry 4l6t
Go to PDB code:
Ligand/metal interactions
PDB id
4l6t
5 instances of ligand highlighted
BGC-GAL-NGA-GAL-
SIA
Ligands
BGC-GAL-NGA-GAL-
SIA
×5
BGC 1(G) to SIA 5(G)
Metals
_ZN
ZN 301(A)
Ligand
BGC-GAL-NGA-GAL-SIA
BGC
-
Beta-D-Glucopyranose [Beta-D-Glucose; d-Glucose; glucose]
Formula:
C
6
H
12
O
6
GAL
-
Beta-D-Galactopyranose [Beta-D-Galactose; d-Galactose; galactose]
Formula:
C
6
H
12
O
6
NGA
-
2-Acetamido-2-Deoxy-Beta-D-Galactopyranose [N-Acetyl-Beta-D-Galactosamine; 2-Acetamido-2-Deoxy- Beta-D-Galactose; 2-Acetamido-2-Deoxy-D-Galactose; 2- Acetamido-2-Deoxy-Galactose; n-Acetyl-D-Galactosamine]
Formula:
C
8
H
15
NO
6
SIA
-
N-Acetyl-Alpha-Neuraminic acid [N-Acetylneuraminic acid; sialic acid; alpha-Sialic acid; o-Sialic acid]
Formula:
C
11
H
9
NO
9
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
BGC 1(G)
12
12
0
0
Complete
Chiral checks - OK
GAL 2(G)
12
12
1
0
Complete
Chiral checks - OK
NGA 3(G)
15
15
1
0
Complete
Chiral checks - OK
GAL 4(G)
12
12
1
0
Complete
Chiral checks - OK
SIA 5(G)
21
21
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand BGC-GAL-NGA-GAL-SIA
List of
interactions
BGC 1(G) to SIA 5(G)
also representing 4 other equivalent ligands:
BGC 1(H) to SIA 5(H)
BGC 1(I) to SIA 5(I)
BGC 1(J) to SIA 5(J)
BGC 1(K) to SIA 5(K)
_ZN
