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PDBsum entry 4fqc
Go to PDB code:
Ligand/metal interactions
PDB id
4fqc
Ligand highlighted
NAG-NAG-BMA-MAN-
NAG-GAL-SIA-MAN-
NAG-FUC
Ligands
NAG-NAG-BMA-MAN-
NAG-GAL-SIA-MAN-
NAG-FUC
NAG 1(A) to FUC 10(A)
TAM
TAM 311(H)
Ligand
NAG-NAG-BMA-MAN-NAG-GAL-SIA-MAN-NAG-FUC
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
BMA
-
Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
MAN
-
Alpha-D-Mannopyranose [Alpha-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
GAL
-
Beta-D-Galactopyranose [Beta-D-Galactose; d-Galactose; galactose]
Formula:
C
6
H
12
O
6
SIA
-
N-Acetyl-Alpha-Neuraminic acid [N-Acetylneuraminic acid; sialic acid; alpha-Sialic acid; o-Sialic acid]
Formula:
C
11
H
19
NO
9
FUC
-
Alpha-L-Fucopyranose [Alpha-L-Fucose; 6-Deoxy-Alpha-L-Galactopyranose; l- Fucose; fucose]
Formula:
C
6
H
12
O
5
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(A)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(A)
15
15
1
0
Complete
Chiral checks - OK
BMA 3(A)
12
12
1
0
Complete
Chiral checks - OK
MAN 4(A)
12
12
1
0
Complete
Chiral checks - OK
NAG 5(A)
15
15
1
0
Complete
Chiral checks - OK
GAL 6(A)
12
12
1
0
Complete
Chiral checks - OK
SIA 7(A)
21
21
1
0
Complete
Chiral checks - OK
MAN 8(A)
12
12
1
0
Complete
Chiral checks - OK
NAG 9(A)
15
15
1
0
Complete
Chiral checks - OK
FUC 10(A)
11
11
1
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
NAG 1(A)
-
0
NAG 2(A)
-
0
BMA 3(A)
-
0
MAN 4(A)
-
0
NAG 5(A)
-
0
GAL 6(A)
-
0
SIA 7(A)
O1B: O1A
|
O1A: O1B
2
MAN 8(A)
-
0
NAG 9(A)
-
0
FUC 10(A)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-BMA-MAN-NAG-GAL-SIA-MAN-NAG-FUC
List of
interactions
NAG 1(A) to FUC 10(A)
