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PDBsum entry 4fmi
Go to PDB code:
Ligand/metal interactions
PDB id
4fmi
Ligand highlighted
NAG-GAL-SIA
Ligands
NAG-GAL-SIA
NAG 1(U) to SIA 3(U)
GAL-SIA
GAL 1(V) to SIA 2(V)
GOL
×25
GOL 404(A)
GOL 403(K)
GOL 501(L)
GOL 503(L)
GOL 402(M)
GOL 501(R)
GOL 401(S)
SIA
×2
SIA 401(E)
SIA 401(M)
Metals
_CL
×21
CL 405(A)
CL 403(S)
Ligand
NAG-GAL-SIA
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
GAL
-
Beta-D-Galactopyranose [Beta-D-Galactose; d-Galactose; galactose]
Formula:
C
6
H
12
O
6
SIA
-
N-Acetyl-Alpha-Neuraminic acid [N-Acetylneuraminic acid; sialic acid; alpha-Sialic acid; o-Sialic acid]
Formula:
C
11
H
9
NO
9
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(U)
15
15
0
0
Complete
Chiral checks - OK
GAL 2(U)
12
12
1
0
Complete
Chiral checks - OK
SIA 3(U)
21
21
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-GAL-SIA
List of
interactions
NAG 1(U) to SIA 3(U)
_CL
×21
