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PDBsum entry 4e0r
Go to PDB code:
Ligand/metal interactions
PDB id
4e0r
2 instances of ligand highlighted
ILE-ASP-TRP-PHE-
ASP-GLY-LYS-GLU
Ligands
ILE-ASP-TRP-PHE-
ASP-GLY-LYS-GLU
×2
ILE 1(C) to GLU 8(C)
Ligand
ILE-ASP-TRP-PHE-ASP-GLY-LYS-GLU
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ILE 1(C)
9
9
1
1
Complete
Chiral checks - OK
ASP 2(C)
9
9
1
1
Complete
Chiral checks - OK
TRP 3(C)
15
15
1
1
Complete
Chiral checks - OK
PHE 4(C)
12
12
1
1
Complete
Chiral checks - OK
ASP 5(C)
9
9
1
1
Complete
Chiral checks - OK
GLY 6(C)
5
-
-
-
Residue too small to validate
LYS 7(C)
10
10
1
1
Complete
Chiral checks - OK
GLU 8(C)
10
10
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
ILE 1(C)
O: OXT
1
ASP 2(C)
OD2: OD1
|
OD1: OD2
|
O: OXT
3
TRP 3(C)
O: OXT
1
PHE 4(C)
O: OXT
1
ASP 5(C)
OD2: OD1
|
OD1: OD2
|
O: OXT
3
GLY 6(C)
-
0
LYS 7(C)
-
0
GLU 8(C)
OXT: O
|
O: OXT
2
Additional Information
Validation carried out using
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Validator
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3D Viewers:
LIGPLOT
of interactions involving ligand ILE-ASP-TRP-PHE-ASP-GLY-LYS-GLU
List of
interactions
ILE 1(C) to GLU 8(C)
(also representing equivalent ligand ILE 1(F) to GLU 8(F) )
