Your browser does not support inline frames or is currently configured not to display inline frames. Content can be viewed at actual source page: inc/head.html
PDBsum entry 4cdh
Go to PDB code:
Ligand/metal interactions
PDB id
4cdh
Ligand highlighted
NAG-NAG-BMA-MAN-
NAG-GAL-MAN-NAG-
GAL-FUL
Ligands
NAG-NAG-BMA-MAN-
NAG-GAL-MAN-NAG-
GAL-FUL
NAG 1(C) to FUL 10(C)
NAG-NAG-BMA-MAN-
NAG-GAL-MAN-NAG
NAG 1(D) to NAG 8(D)
Ligand
NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-GAL-FUL
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
BMA
-
Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
MAN
-
Alpha-D-Mannopyranose [Alpha-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
GAL
-
Beta-D-Galactopyranose [Beta-D-Galactose; d-Galactose; galactose]
Formula:
C
6
H
12
O
6
FUL
-
Beta-L-Fucopyranose [Beta-L-Fucose; 6-Deoxy-Beta-L-Galactopyranose; l- Fucose; fucose; 6-Deoxy-Beta-L-Galactose]
Formula:
C
6
H
12
O
5
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(C)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(C)
15
15
1
0
Complete
Chiral checks - OK
BMA 3(C)
12
12
1
0
Complete
Chiral checks - OK
MAN 4(C)
12
12
1
0
Complete
Chiral checks - OK
NAG 5(C)
15
15
1
0
Complete
Chiral checks - OK
GAL 6(C)
12
12
1
0
Complete
Chiral checks - OK
MAN 7(C)
12
12
1
0
Complete
Chiral checks - OK
NAG 8(C)
15
15
1
0
Complete
Chiral checks - OK
GAL 9(C)
12
12
1
0
Complete
Chiral checks - OK
FUL 10(C)
11
11
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
Use mouse to move/zoom
3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-GAL-FUL
List of
interactions
NAG 1(C) to FUL 10(C)
