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PDBsum entry 3w3d
Go to PDB code:
Ligand/metal interactions
PDB id
3w3d
Ligand highlighted
NAG-NAG-BMA-BMA-
MAN-MAN-BMA
Ligands
NAG-NAG-BMA-BMA-
MAN-MAN-BMA
NAG 1(C) to BMA 7(C)
ATP
ATP 401(A)
Metals
_CA
×2
CA 402(A)
CA 308(B)
Ligand
NAG-NAG-BMA-BMA-MAN-MAN-BMA
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
BMA
-
Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
MAN
-
Alpha-D-Mannopyranose [Alpha-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(C)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(C)
15
15
1
0
Complete
Chiral checks - OK
BMA 3(C)
12
12
1
0
Complete
Chiral checks - OK
BMA 4(C)
12
12
1
0
Complete
Chiral checks - OK
MAN 5(C)
12
12
1
0
Complete
Chiral checks - OK
MAN 6(C)
12
12
1
0
Complete
Chiral checks - OK
BMA 7(C)
12
12
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-BMA-BMA-MAN-MAN-BMA
List of
interactions
NAG 1(C) to BMA 7(C)
_CA
×2
