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PDBsum entry 3v5k
Go to PDB code:
Ligand/metal interactions
PDB id
3v5k
2 instances of ligand highlighted
LYS-VAL-ALA-GLU-
LEU-VAL-TRP-PHE-
LEU
Ligands
LYS-VAL-ALA-GLU-
LEU-VAL-TRP-PHE-
LEU
×2
LYS 1(C) to LEU 9(C)
GOL
GOL 276(D)
Ligand
LYS-VAL-ALA-GLU-LEU-VAL-TRP-PHE-LEU
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
LYS 1(C)
10
10
1
1
Complete
Chiral checks - OK
VAL 2(C)
8
8
1
1
Complete
Chiral checks - OK
ALA 3(C)
6
-
-
-
Residue too small to validate
GLU 4(C)
10
10
1
1
Complete
Chiral checks - OK
LEU 5(C)
9
9
1
1
Complete
Chiral checks - OK
VAL 6(C)
8
8
1
1
Complete
Chiral checks - OK
TRP 7(C)
15
15
1
1
Complete
Chiral checks - OK
PHE 8(C)
12
12
1
1
Complete
Chiral checks - OK
LEU 9(C)
9
9
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
LYS 1(C)
-
0
VAL 2(C)
-
0
ALA 3(C)
-
0
GLU 4(C)
OE2: OE1
|
OE1: OE2
|
O: OXT
3
LEU 5(C)
O: OXT
1
VAL 6(C)
-
0
TRP 7(C)
-
0
PHE 8(C)
O: OXT
1
LEU 9(C)
OXT: O
|
O: OXT
2
Additional Information
Validation carried out using
MotiveValidator
. Nothing to show in
Validator
DB
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3D Viewers:
LIGPLOT
of interactions involving ligand LYS-VAL-ALA-GLU-LEU-VAL-TRP-PHE-LEU
List of
interactions
LYS 1(C) to LEU 9(C)
(also representing equivalent ligand LYS 1(F) to LEU 9(F) )
