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PDBsum entry 3o3d
Go to PDB code:
Ligand/metal interactions
PDB id
3o3d
2 instances of ligand highlighted
GLU-LEU-ALA-TIG-
3AZ-LEU-THR-VAL
Ligands
GLU-LEU-ALA-TIG-
3AZ-LEU-THR-VAL
×2
GLU 1(C) to VAL 8(C)
GOL
×5
GOL 276(A)
GOL 277(A)
GOL 100(B)
Ligand
GLU-LEU-ALA-TIG-3AZ-LEU-THR-VAL
TIG
-
N-(2-Aminoethyl)-L-Tryptophan
Formula:
C
13
H
17
N
3
O
2
3AZ
-
3-(Aminomethyl)benzoic acid
Formula:
C
8
H
9
NO
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
GLU 1(C)
10
10
1
1
Complete
Chiral checks - OK
LEU 2(C)
9
9
1
1
Complete
Chiral checks - OK
ALA 3(C)
6
-
-
-
Residue too small to validate
TIG 4(C)
18
18
1
1
Complete
Chiral checks - OK
3AZ 5(C)
11
11
1
1
Complete
Chiral checks - OK
LEU 6(C)
9
9
1
1
Complete
Chiral checks - OK
THR 7(C)
8
8
1
1
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
GLU 1(C)
OE2: OE1
|
OE1: OE2
|
O: OXT
3
LEU 2(C)
O: OXT
1
ALA 3(C)
-
0
TIG 4(C)
O: OXT
1
3AZ 5(C)
O: OXT
1
LEU 6(C)
-
0
THR 7(C)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand GLU-LEU-ALA-TIG-3AZ-LEU-THR-VAL
List of
interactions
GLU 1(C) to VAL 8(C)
(also representing equivalent ligand GLU 1(F) to VAL 8(F) )
