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PDBsum entry 3knh
Go to PDB code:
Ligand/metal interactions
PDB id
3knh
Ligand highlighted
KBE-DPP-SER-SER-
UAL-5OH
Ligands
KBE-DPP-SER-SER-
UAL-5OH
KBE 1(Z) to 5OH 6(Z)
Metals
_MG
×160
MG 1732(A)
MG 301(C)
MG 201(E)
MG 201(F)
MG 201(H)
MG 202(K)
MG 201(L)
MG 101(O)
MG 202(T)
MG 108(W)
MG 107(X)
MG 102(Y)
MG 1601(A)
MG 1602(A)
MG 1603(A)
MG 1604(A)
MG 1605(A)
MG 1606(A)
MG 1607(A)
MG 1608(A)
MG 1609(A)
MG 1610(A)
MG 1611(A)
MG 1612(A)
MG 1613(A)
MG 1614(A)
MG 1615(A)
MG 1616(A)
MG 1617(A)
MG 1618(A)
MG 1619(A)
MG 1620(A)
MG 1621(A)
MG 1622(A)
MG 1623(A)
MG 1624(A)
MG 1625(A)
MG 1626(A)
MG 1627(A)
MG 1628(A)
MG 1629(A)
MG 1630(A)
MG 1631(A)
MG 1632(A)
MG 1633(A)
MG 1634(A)
MG 1635(A)
MG 1636(A)
MG 1637(A)
MG 1638(A)
MG 1639(A)
MG 1640(A)
MG 1641(A)
MG 1642(A)
MG 1643(A)
MG 1644(A)
MG 1645(A)
MG 1646(A)
MG 1647(A)
MG 1648(A)
MG 1649(A)
MG 1650(A)
MG 1651(A)
MG 1652(A)
MG 1653(A)
MG 1654(A)
MG 1655(A)
MG 1656(A)
MG 1657(A)
MG 1658(A)
MG 1659(A)
MG 1660(A)
MG 1661(A)
MG 1662(A)
MG 1663(A)
MG 1664(A)
MG 1665(A)
MG 1666(A)
MG 1667(A)
MG 1668(A)
MG 1669(A)
MG 1670(A)
MG 1671(A)
MG 1672(A)
MG 1673(A)
MG 1674(A)
MG 1675(A)
MG 1676(A)
MG 1677(A)
MG 1678(A)
MG 1679(A)
MG 1680(A)
MG 1681(A)
MG 1682(A)
MG 1683(A)
MG 1684(A)
MG 1685(A)
MG 1686(A)
MG 1687(A)
MG 1688(A)
... plus 60 others
_ZN
ZN 302(D)
Ligand
KBE-DPP-SER-SER-UAL-5OH
KBE
-
Beta-Lysine [(3s)-3,6-Diaminohexanoic acid]
Formula:
C
6
H
14
N
2
O
2
DPP
-
Diaminopropanoic acid
Formula:
C
3
H
8
N
2
O
2
UAL
-
(2z)-2-Amino-3-(Carbamoylamino)prop-2-Enoic acid
Formula:
C
4
H
7
N
3
O
3
5OH
-
(2s)-Amino[(4r,6s)-2-Amino-6-Hydroxy-3,4,5,6- Tetrahydropyrimidin-4-Yl]ethanoic acid
Formula:
C
6
H
12
N
4
O
3
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
KBE 1(Z)
10
10
1
1
0
0
0
0
0
0
DPP 2(Z)
7
7
1
1
0
0
0
0
0
0
SER 3(Z)
7
6
0
0
1
0
-
-
-
-
SER 4(Z)
7
6
0
0
1
0
-
-
-
-
UAL 5(Z)
10
10
1
1
0
0
0
0
0
0
5OH 6(Z)
13
13
1
1
0
0
0
0
0
0
Advanced Analysis
Residue
Name Mismatches
Count
KBE 1(Z)
-
0
DPP 2(Z)
-
0
SER 3(Z)
CB: C
|
C: CB
|
O: OG
|
OG: OXT
4
SER 4(Z)
CB: C
|
C: CB
|
O: OG
|
OG: OXT
4
UAL 5(Z)
-
0
5OH 6(Z)
-
0
Additional Information
Obsolete entries are not available in the
Validator
DB
.
Validation carried out using
MotiveValidator
.
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of interactions involving ligand KBE-DPP-SER-SER-UAL-5OH
List of
interactions
KBE 1(Z) to 5OH 6(Z)
_MG
×160
_ZN
