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PDBsum entry 3efx
Go to PDB code:
Ligand/metal interactions
PDB id
3efx
10 instances of ligand highlighted
BGC-GAL-FUC-A2G-
FUC
Ligands
BGC-GAL-FUC-A2G-
FUC
×10
BGC 1(A) to FUC 5(A)
BGC 1(B) to FUC 5(B)
BGC 1(C) to FUC 5(C)
BGC 1(O) to FUC 5(O)
BGC 1(Q) to FUC 5(Q)
BGC 1(T) to FUC 5(T)
Ligand
BGC-GAL-FUC-A2G-FUC
BGC
-
Beta-D-Glucopyranose [Beta-D-Glucose; d-Glucose; glucose]
Formula:
C
6
H
12
O
6
GAL
-
Beta-D-Galactopyranose [Beta-D-Galactose; d-Galactose; galactose]
Formula:
C
6
H
12
O
6
FUC
-
Alpha-L-Fucopyranose [Alpha-L-Fucose; 6-Deoxy-Alpha-L-Galactopyranose; l- Fucose; fucose]
Formula:
C
6
H
12
O
5
A2G
-
2-Acetamido-2-Deoxy-Alpha-D-Galactopyranose [N-Acetyl-Alpha-D-Galactosamine; 2-Acetamido-2-Deoxy- Alpha-D-Galactose; 2-Acetamido-2-Deoxy-D-Galactose; 2- Acetamido-2-Deoxy-Galactose; n-Acetyl-2-Deoxy-2-Amino- Galactose]
Formula:
C
8
H
15
NO
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
BGC 1(A)
12
12
0
0
Complete
Chiral checks - OK
GAL 2(A)
12
12
1
0
Complete
Chiral checks - OK
FUC 3(A)
11
11
1
0
Complete
Chiral checks - OK
A2G 4(A)
15
15
1
0
Complete
Chiral checks - OK
FUC 5(A)
11
11
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand BGC-GAL-FUC-A2G-FUC
List of
interactions
BGC 1(A) to FUC 5(A)
