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PDBsum entry 3d9n
Go to PDB code:
Ligand/metal interactions
PDB id
3d9n
2 instances of ligand highlighted
PRO-SEP-TYR-SEP-
PRO-THR-SER-PRO
Ligands
PRO-SEP-TYR-SEP-
PRO-THR-SER-PRO
×2
PRO -1(Y) to PRO 6(Y)
SO4
×10
SO4 1004(A)
SO4 1010(A)
SO4 1112(A)
SO4 1113(A)
SO4 1114(A)
SO4 1115(A)
SO4 1009(B)
Ligand
PRO-SEP-TYR-SEP-PRO-THR-SER-PRO
-
Phosphoserine
[Phosphonoserine]
Formula:
C
3
H
8
NO
6
P
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
PRO -1(Y)
8
8
1
1
0
0
0
0
0
0
SEP 0(Y)
11
11
1
1
0
0
0
0
0
0
TYR 1(Y)
13
13
1
1
0
0
0
0
0
0
SEP 2(Y)
11
11
1
1
0
0
0
0
0
0
PRO 3(Y)
8
8
1
1
0
0
0
0
0
0
THR 4(Y)
8
8
1
1
0
0
0
0
0
0
SER 5(Y)
7
6
0
0
1
0
-
-
-
-
PRO 6(Y)
8
7
0
0
1
0
-
-
-
-
Advanced Analysis
Residue
Name Mismatches
Count
PRO -1(Y)
O: OXT
1
SEP 0(Y)
O2P: O1P
|
O1P: O2P
2
TYR 1(Y)
-
0
SEP 2(Y)
-
0
PRO 3(Y)
-
0
THR 4(Y)
-
0
SER 5(Y)
CB: C
|
C: CB
|
O: OG
|
OG: OXT
4
PRO 6(Y)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand PRO-SEP-TYR-SEP-PRO-THR-SER-PRO
List of
interactions
PRO -1(Y) to PRO 6(Y)
(also representing equivalent ligand PRO -1(Z) to PRO 6(Z) )
