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PDBsum entry 3d3v
Go to PDB code:
Ligand/metal interactions
PDB id
3d3v
Ligand highlighted
LEU-LEU-PHE-GLY-
F2F-PRO-VAL-TYR-
VAL
Ligands
LEU-LEU-PHE-GLY-
F2F-PRO-VAL-TYR-
VAL
LEU 1(C) to VAL 9(C)
GOL
×6
GOL 276(A)
GOL 277(A)
GOL 100(B)
GOL 101(B)
GOL 247(E)
GOL 248(E)
Ligand
LEU-LEU-PHE-GLY-F2F-PRO-VAL-TYR-VAL
-
3,4-Difluoro-L-Phenylalanine
Formula:
C
9
H
9
F
2
NO
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
LEU 1(C)
9
9
1
1
Complete
Chiral checks - OK
LEU 2(C)
9
9
1
1
Complete
Chiral checks - OK
PHE 3(C)
12
12
1
1
Complete
Chiral checks - OK
GLY 4(C)
5
-
-
-
Residue too small to validate
F2F 5(C)
14
14
1
1
Complete
Chiral checks - OK
PRO 6(C)
8
8
1
1
Complete
Chiral checks - OK
VAL 7(C)
8
8
1
1
Complete
Chiral checks - OK
TYR 8(C)
13
13
1
1
Complete
Chiral checks - OK
VAL 9(C)
8
8
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
LEU 1(C)
O: OXT
1
LEU 2(C)
O: OXT
1
PHE 3(C)
-
0
GLY 4(C)
-
0
F2F 5(C)
-
0
PRO 6(C)
-
0
VAL 7(C)
-
0
TYR 8(C)
O: OXT
1
VAL 9(C)
OXT: O
|
O: OXT
2
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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LIGPLOT
of interactions involving ligand LEU-LEU-PHE-GLY-F2F-PRO-VAL-TYR-VAL
List of
interactions
LEU 1(C) to VAL 9(C)
