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PDBsum entry 3d25
Go to PDB code:
Ligand/metal interactions
PDB id
3d25
Ligand highlighted
VAL-LEU-HIS-ASP-
ASP-LEU-LEU-GLU-
ALA
Ligands
VAL-LEU-HIS-ASP-
ASP-LEU-LEU-GLU-
ALA
VAL 1(C) to ALA 9(C)
Ligand
VAL-LEU-HIS-ASP-ASP-LEU-LEU-GLU-ALA
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
VAL 1(C)
8
8
1
1
Complete
Chiral checks - OK
LEU 2(C)
9
9
1
1
Complete
Chiral checks - OK
HIS 3(C)
11
11
1
1
Complete
Chiral checks - OK
ASP 4(C)
9
9
1
1
Complete
Chiral checks - OK
ASP 5(C)
9
9
1
1
Complete
Chiral checks - OK
LEU 6(C)
9
9
1
1
Complete
Chiral checks - OK
LEU 7(C)
9
9
1
1
Complete
Chiral checks - OK
GLU 8(C)
10
10
1
1
Complete
Chiral checks - OK
ALA 9(C)
6
-
-
-
Residue too small to validate
Advanced Analysis
Residue
Name Mismatches
Count
VAL 1(C)
-
0
LEU 2(C)
O: OXT
1
HIS 3(C)
-
0
ASP 4(C)
OD2: OD1
|
OD1: OD2
2
ASP 5(C)
O: OXT
1
LEU 6(C)
O: OXT
1
LEU 7(C)
O: OXT
1
GLU 8(C)
-
0
ALA 9(C)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Nothing to show in
Validator
DB
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3D Viewers:
LIGPLOT
of interactions involving ligand VAL-LEU-HIS-ASP-ASP-LEU-LEU-GLU-ALA
List of
interactions
VAL 1(C) to ALA 9(C)
