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PDBsum entry 3d23
Go to PDB code:
Ligand/metal interactions
PDB id
3d23
4 instances of ligand highlighted
02J-ALA-VAL-LEU-
PJE-010
Ligands
02J-ALA-VAL-LEU-
PJE-010
×4
02J 1(H) to 010 6(H)
Ligand
02J-ALA-VAL-LEU-PJE-010
02J
-
5-Methyl-1,2-Oxazole-3-Carboxylic acid
Formula:
C
5
H
5
NO
3
PJE
-
(E,4s)-4-Azanyl-5-[(3s)-2-Oxidanylidenepyrrolidin-3- Yl]pent-2-Enoic acid
Formula:
C
9
HNN
2
O
3
010
-
Phenylmethanol
Formula:
C
7
H
8
O
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
02J 1(H)
9
9
1
1
Complete
Chiral checks - OK
ALA 2(H)
6
-
-
-
Residue too small to validate
VAL 3(H)
8
8
1
1
Complete
Chiral checks - OK
LEU 4(H)
9
9
1
1
Complete
Chiral checks - OK
PJE 5(H)
14
14
1
0
Complete
Chiral checks - OK
010 6(H)
8
8
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
02J 1(H)
-
0
ALA 2(H)
-
0
VAL 3(H)
-
0
LEU 4(H)
O: OXT
1
PJE 5(H)
O7: O6
1
010 6(H)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand 02J-ALA-VAL-LEU-PJE-010
List of
interactions
02J 1(H) to 010 6(H)
also representing 3 other equivalent ligands:
02J 1(F) to 010 6(F)
02J 1(E) to 010 6(E)
02J 1(G) to 010 6(G)
