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PDBsum entry 2yip
Go to PDB code:
Ligand/metal interactions
PDB id
2yip
6 instances of ligand highlighted
YIO
Ligands
YIO
×6
YIO 1135(A)
GOL
×7
GOL 1136(B)
GOL 1136(C)
GOL 1137(C)
GOL 1136(E)
GOL 1137(E)
GOL 1138(E)
GOL 1136(F)
Metals
_CL
×13
CL 1139(A)
CL 1137(B)
CL 1139(C)
CL 1137(D)
CL 1140(F)
CL 1137(A)
CL 1138(A)
CL 1138(C)
CL 1136(D)
CL 1139(F)
Ligand
YIO
-
1-Thio-Beta-D-Galactopyranose
[(2r,3r,4s,5r,6s)-2-(Hydroxymethyl)-6-Sulfanyl-Oxane-3, 4,5-
Triol; 1-Thio-Beta-D-Galactose; 1-Thio-D- Galactose; 1-
Thio-Galactose]
Formula:
C
6
H
12
O
5
S
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
YIO 1135(A)
12
12
0
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand YIO
List of
interactions
YIO 1135(A)
also representing 5 other equivalent ligands:
YIO 1135(B)
YIO 1135(C)
YIO 1135(D)
YIO 1135(E)
YIO 1135(F)
_CL
×13
