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PDBsum entry 2y1k
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Ligand/metal interactions
PDB id
2y1k
Ligand highlighted
NAG-FUC
Ligands
NAG-FUC
NAG 1(B) to FUC 2(B)
SO4
×5
SO4 601(A)
SO4 605(A)
SO4 608(A)
SO4 610(A)
SO4 611(A)
GOL
GOL 604(A)
NAG
×7
NAG 609(A)
NAG 612(A)
NAG 614(A)
NAG 615(A)
NAG 616(A)
NAG 617(A)
NAG 618(A)
FUC
×2
FUC 613(A)
FUC 619(A)
Metals
_NA
NA 602(A)
_CL
CL 603(A)
Ligand
NAG-FUC
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
FUC
-
Alpha-L-Fucopyranose [Alpha-L-Fucose; 6-Deoxy-Alpha-L-Galactopyranose; l- Fucose; fucose]
Formula:
C
6
H
12
O
5
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(B)
15
15
1
1
Complete
Chiral checks - OK
FUC 2(B)
11
11
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-FUC
List of
interactions
NAG 1(B) to FUC 2(B)
_NA
