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PDBsum entry 2vs4
Go to PDB code:
Ligand/metal interactions
PDB id
2vs4
2 instances of ligand highlighted
NDG-GAL
Ligands
NDG-GAL
×2
NDG 1(C) to GAL 2(C)
UDP
×2
UDP 402(A)
GOL
×2
GOL 404(A)
GOL 404(B)
Metals
_MN
×2
MN 401(A)
Ligand
NDG-GAL
NDG
-
2-Acetamido-2-Deoxy-Alpha-D-Glucopyranose [N-Acetyl-Alpha-D-Glucosamine; 2-Acetamido-2-Deoxy- Alpha-D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2- Acetamido-2-Deoxy-Glucose; 2-(Acetylamino)-2-Deoxy-A- D-Glucopyranose]
Formula:
C
8
H
15
NO
6
GAL
-
Beta-D-Galactopyranose [Beta-D-Galactose; d-Galactose; galactose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NDG 1(C)
15
15
0
0
0
0
0
0
1
0
GAL 2(C)
12
12
1
0
0
0
0
0
0
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NDG-GAL
List of
interactions
NDG 1(C) to GAL 2(C)
(also representing equivalent ligand NDG 1(D) to GAL 2(D) )
_MN
×2
