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PDBsum entry 2vdp
Go to PDB code:
Ligand/metal interactions
PDB id
2vdp
Ligand highlighted
GLY-ALA-LYS-GLN-
ALA-GLY-ASP-VAL
Ligands
GLY-ALA-LYS-GLN-
ALA-GLY-ASP-VAL
GLY 404(C) to VAL 411(C)
NAG-NAG-MAN-MAN-
MAN
NAG 1(D) to MAN 5(D)
NAG-NAG-MAN-MAN-
MAN-MAN-MAN
NAG 1(E) to MAN 7(E)
GOL
×2
GOL 1453(A)
GOL 1462(B)
NAG
×3
NAG 3015(A)
NAG 3249(A)
NAG 3099(B)
Metals
_CA
×6
CA 2004(A)
CA 2005(A)
CA 2006(A)
CA 2007(A)
CA 2002(B)
CA 2003(B)
_MG
MG 2001(B)
Ligand
GLY-ALA-LYS-GLN-ALA-GLY-ASP-VAL
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
GLY 404(C)
5
-
-
-
Residue too small to validate
ALA 405(C)
6
-
-
-
Residue too small to validate
LYS 406(C)
10
10
1
1
Complete
Chiral checks - OK
GLN 407(C)
10
10
1
1
Complete
Chiral checks - OK
ALA 408(C)
6
-
-
-
Residue too small to validate
GLY 409(C)
5
-
-
-
Residue too small to validate
ASP 410(C)
9
9
1
1
Complete
Chiral checks - OK
VAL 411(C)
8
8
0
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
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Validator
DB
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3D Viewers:
LIGPLOT
of interactions involving ligand GLY-ALA-LYS-GLN-ALA-GLY-ASP-VAL
List of
interactions
GLY 404(C) to VAL 411(C)
_CA
×6
_MG
