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PDBsum entry 2ox9
Go to PDB code:
Ligand/metal interactions
PDB id
2ox9
4 instances of ligand highlighted
NAG-FUC-GAL
Ligands
NAG-FUC-GAL
×4
NAG 1(E) to GAL 3(E)
Metals
_CA
×16
CA 804(A)
CA 801(A)
CA 802(A)
CA 803(A)
Ligand
NAG-FUC-GAL
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
FUC
-
Alpha-L-Fucopyranose [Alpha-L-Fucose; 6-Deoxy-Alpha-L-Galactopyranose; l- Fucose; fucose]
Formula:
C
6
H
12
O
5
GAL
-
Beta-D-Galactopyranose [Beta-D-Galactose; d-Galactose; galactose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(E)
15
15
0
0
Complete
Chiral checks - OK
FUC 2(E)
11
11
1
0
Complete
Chiral checks - OK
GAL 3(E)
12
12
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-FUC-GAL
List of
interactions
NAG 1(E) to GAL 3(E)
also representing 3 other equivalent ligands:
NAG 1(F) to GAL 3(F)
NAG 1(G) to GAL 3(G)
NAG 1(H) to GAL 3(H)
_CA
×16
