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PDBsum entry 2od2
Go to PDB code:
Ligand/metal interactions
PDB id
2od2
Ligand highlighted
LYS-GLY-GLY-ALA-
ALY-ARG-HIS
Ligands
LYS-GLY-GLY-ALA-
ALY-ARG-HIS
LYS 12(B) to HIS 18(B)
CNA
CNA 1001(A)
GOL
×4
GOL 1989(A)
GOL 1990(A)
GOL 1991(A)
GOL 1992(A)
Metals
_ZN
ZN 701(A)
Ligand
LYS-GLY-GLY-ALA-ALY-ARG-HIS
-
N(6)-Acetyllysine
Formula:
C
8
H
16
N
2
O
3
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
LYS 12(B)
10
10
1
1
0
0
0
0
0
0
GLY 13(B)
5
-
-
-
-
-
-
-
-
-
GLY 14(B)
5
-
-
-
-
-
-
-
-
-
ALA 15(B)
6
-
-
-
-
-
-
-
-
-
ALY 16(B)
13
13
1
1
0
0
0
0
0
0
ARG 17(B)
12
12
1
1
0
0
0
0
0
0
HIS 18(B)
11
10
0
0
1
0
-
-
-
-
Advanced Analysis
Residue
Name Mismatches
Count
LYS 12(B)
-
0
GLY 13(B)
-
0
GLY 14(B)
-
0
ALA 15(B)
-
0
ALY 16(B)
-
0
ARG 17(B)
O: OXT
1
HIS 18(B)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Ligand matches this enzyme's product nicotinamide with similarity 61.54%
LIGPLOT
of interactions involving ligand LYS-GLY-GLY-ALA-ALY-ARG-HIS
List of
interactions
LYS 12(B) to HIS 18(B)
_ZN
