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PDBsum entry 2kmb
Go to PDB code:
Ligand/metal interactions
PDB id
2kmb
2 instances of ligand highlighted
MAG-GAL-SIA-FUC
Ligands
MAG-GAL-SIA-FUC
×2
MAG 1(A) to FUC 4(A)
NAG-GAL-SIA-FUC
NAG 1(C) to FUC 4(C)
Metals
_CL
×3
CL 5(1)
_CA
×10
CA 1(1)
CA 2(1)
CA 3(1)
CA 4(1)
Ligand
MAG-GAL-SIA-FUC
MAG
-
Methyl 2-Acetamido-2-Deoxy-Beta-D-Glucopyranoside [Beta-Methyl-N-Acetyl-D-Glucosamine; methyl 2-Acetamido- 2-Deoxy-Beta-D-Glucoside; methyl 2-Acetamido-2-Deoxy- D-Glucoside; methyl 2-Acetamido-2-Deoxy-Glucoside]
Formula:
C
9
H
17
NO
6
GAL
-
Beta-D-Galactopyranose [Beta-D-Galactose; d-Galactose; galactose]
Formula:
C
6
H
12
O
6
SIA
-
N-Acetyl-Alpha-Neuraminic acid [N-Acetylneuraminic acid; sialic acid; alpha-Sialic acid; o-Sialic acid]
Formula:
C
11
H
9
NO
9
FUC
-
Alpha-L-Fucopyranose [Alpha-L-Fucose; 6-Deoxy-Alpha-L-Galactopyranose; l- Fucose; fucose]
Formula:
C
6
H
12
O
5
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
MAG 1(A)
16
16
0
0
Complete
Chiral checks - OK
GAL 2(A)
12
12
1
0
Complete
Chiral checks - OK
SIA 3(A)
21
21
1
0
Complete
Chiral checks - OK
FUC 4(A)
11
11
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand MAG-GAL-SIA-FUC
List of
interactions
MAG 1(A) to FUC 4(A)
(also representing equivalent ligand MAG 1(B) to FUC 4(B) )
_CL
×3
_CA
×10
