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PDBsum entry 2jdo
Go to PDB code:
Ligand/metal interactions
PDB id
2jdo
Ligand highlighted
GLY-ARG-PRO-ARG-
THR-THR-SER-PHE-
ALA-GLU
Ligands
GLY-ARG-PRO-ARG-
THR-THR-SER-PHE-
ALA-GLU
GLY 3(C) to GLU 12(C)
I5S
I5S 1480(A)
EDO
EDO 1481(A)
Ligand
GLY-ARG-PRO-ARG-THR-THR-SER-PHE-ALA-GLU
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
GLY 3(C)
5
-
-
-
Residue too small to validate
ARG 4(C)
12
12
1
1
Complete
Chiral checks - OK
PRO 5(C)
8
8
1
1
Complete
Chiral checks - OK
ARG 6(C)
12
12
1
1
Complete
Chiral checks - OK
THR 7(C)
8
8
1
1
Complete
Chiral checks - OK
THR 8(C)
8
8
1
1
Complete
Chiral checks - OK
SER 9(C)
7
7
1
1
Complete
Chiral checks - OK
PHE 10(C)
12
12
1
1
Complete
Chiral checks - OK
ALA 11(C)
6
-
-
-
Residue too small to validate
GLU 12(C)
10
10
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
GLY 3(C)
-
0
ARG 4(C)
-
0
PRO 5(C)
-
0
ARG 6(C)
O: OXT
1
THR 7(C)
-
0
THR 8(C)
-
0
SER 9(C)
-
0
PHE 10(C)
-
0
ALA 11(C)
-
0
GLU 12(C)
-
0
Additional Information
Validation carried out using
MotiveValidator
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Validator
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LIGPLOT
of interactions involving ligand GLY-ARG-PRO-ARG-THR-THR-SER-PHE-ALA-GLU
List of
interactions
GLY 3(C) to GLU 12(C)
