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PDBsum entry 2jdk
Go to PDB code:
Ligand/metal interactions
PDB id
2jdk
3 instances of ligand highlighted
NAG-FUC
Ligands
NAG-FUC
×3
NAG 1(E) to FUC 2(E)
NAG 1(G) to FUC 2(G)
FUC
FUC 1115(A)
T45
×3
T45 1117(B)
T45 1120(C)
T45 1117(D)
SO4
SO4 1115(C)
Metals
_CA
×8
CA 1117(A)
CA 1116(A)
Ligand
NAG-FUC
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
FUC
-
Alpha-L-Fucopyranose [Alpha-L-Fucose; 6-Deoxy-Alpha-L-Galactopyranose; l- Fucose; fucose]
Formula:
C
6
H
12
O
5
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(E)
15
15
1
1
Complete
Chiral checks - OK
FUC 2(E)
11
11
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-FUC
List of
interactions
NAG 1(E) to FUC 2(E)
(also representing equivalent ligand NAG 1(F) to FUC 2(F) )
_CA
×8
