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PDBsum entry 2gtw
Go to PDB code:
Ligand/metal interactions
PDB id
2gtw
2 instances of ligand highlighted
LEU-ALA-GLY-ILE-
GLY-ILE-LEU-THR-
VAL
Ligands
LEU-ALA-GLY-ILE-
GLY-ILE-LEU-THR-
VAL
×2
LEU 1(C) to VAL 9(C)
GOL
×5
GOL 1001(A)
GOL 1003(A)
GOL 1005(B)
FMT
×4
FMT 2003(A)
FMT 2004(A)
FMT 2002(B)
Metals
_NA
×2
NA 3006(E)
Ligand
LEU-ALA-GLY-ILE-GLY-ILE-LEU-THR-VAL
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
LEU 1(C)
9
9
1
1
Complete
Chiral checks - OK
ALA 2(C)
6
-
-
-
Residue too small to validate
GLY 3(C)
5
-
-
-
Residue too small to validate
ILE 4(C)
9
9
1
1
Complete
Chiral checks - OK
GLY 5(C)
5
-
-
-
Residue too small to validate
ILE 6(C)
9
9
1
1
Complete
Chiral checks - OK
LEU 7(C)
9
9
1
1
Complete
Chiral checks - OK
THR 8(C)
8
8
1
1
Complete
Chiral checks - OK
VAL 9(C)
8
8
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
LEU 1(C)
O: OXT
1
ALA 2(C)
-
0
GLY 3(C)
-
0
ILE 4(C)
O: OXT
1
GLY 5(C)
-
0
ILE 6(C)
-
0
LEU 7(C)
O: OXT
1
THR 8(C)
-
0
VAL 9(C)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Nothing to show in
Validator
DB
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3D Viewers:
LIGPLOT
of interactions involving ligand LEU-ALA-GLY-ILE-GLY-ILE-LEU-THR-VAL
List of
interactions
LEU 1(C) to VAL 9(C)
(also representing equivalent ligand LEU 1(F) to VAL 9(F) )
_NA
×2
