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PDBsum entry 2gpm
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Ligand/metal interactions PDB id
2gpm
_0C-_0U-_0G-_0G-
_0G-_0C-_0G-_0G

Ligands
_0C-_0U-_0G-_0G-
_0G-_0C-_0G-_0G ×2
0C 79(K) to 0G 86(K)
0C 79(M) to 0G 86(M)
_0C-_0C-_0G-_0C-
_0C-_0U-_0G-_0G ×2
0C 90(L) to 0G 97(L)
0C 90(N) to 0G 97(N)
Metals
_CA ×6
CA 310(L)
CA 311(M)
CA 306(N)
CA 308(M)
CA 302(N)
CA 304(N)
  
Ligand _0C-_0U-_0G-_0G-_0G-_0C-_0G-_0G

0C - L-Cytidine-5'-Monophosphate Formula: C9H14N3O8P
0U - L-Uridine-5'-Monophosphate Formula: C9H13N2O9P
0G - L-Guanosine-5'-Monophosphate Formula: C10H14N5O8P
Validation of ligand annotation
Per Residue Validation
Atoms Missing Incorrect Chiral Centres
Residue Dic. Struc. Link Subs. Atoms Rings Planar High C Other
0C 79(K) 21 17 0 0 4 0 - - - -
0U 80(K) 21 21 1 0 0 0 0 0 0 0
0G 81(K) 24 24 1 0 0 0 0 0 0 0
0G 82(K) 24 24 1 0 0 0 0 0 0 0
0G 83(K) 24 24 1 0 0 0 0 0 0 0
0C 84(K) 21 21 1 0 0 0 0 0 0 0
0G 85(K) 24 24 1 0 0 0 0 0 0 0
0G 86(K) 24 24 1 0 0 0 0 0 0 0
Advanced Analysis
Residue Name Mismatches Count
0C 79(K) - 0
0U 80(K) OP2: OP1|OP1: OP2 2
0G 81(K) OP2: OP1|OP1: OP2 2
0G 82(K) OP2: OP1|OP1: OP2 2
0G 83(K) OP2: OP1|OP1: OP2 2
0C 84(K) OP2: OP1|OP1: OP2 2
0G 85(K) OP2: OP1|OP1: OP2 2
0G 86(K) OP2: OP1|OP1: OP2 2
Additional Information
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  JSmol

LIGPLOT of interactions involving ligand _0C-_0U-_0G-_0G-_0G-_0C-_0G-_0G

JSmol




List of
interactions
 

0C 79(K) to 0G 86(K)
  
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