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PDBsum entry 2gdi
Go to PDB code:
Ligand/metal interactions
PDB id
2gdi
2 instances of ligand highlighted
TPP
Ligands
TPP
×2
TPP 100(X)
TPP 100(Y)
Metals
_NA
×2
NA 121(X)
NA 122(X)
__K
×3
K 123(X)
K 124(X)
K 125(X)
_MG
×6
MG 101(X)
MG 102(X)
MG 103(X)
MG 111(Y)
MG 112(Y)
MG 113(Y)
Ligand
TPP
-
Thiamine diphosphate
Formula:
C
12
H
19
N
4
O
7
P
2
S
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
TPP 100(X)
26
26
0
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand TPP
List of
interactions
TPP 100(X)
_NA
×2
__K
×3
_MG
×6
