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PDBsum entry 2fd6
Go to PDB code:
Ligand/metal interactions
PDB id
2fd6
Ligand highlighted
NAG-FUC
Ligands
NAG-FUC
NAG 1(B) to FUC 2(B)
NAG-NAG
NAG 1(C) to NAG 2(C)
SO4
SO4 501(A)
ETX
×3
ETX 401(L)
ETX 407(L)
ETX 403(H)
EDO
×2
EDO 405(L)
EDO 404(H)
PGE
PGE 406(H)
NDG
NDG 400(U)
PG4
PG4 402(U)
Ligand
NAG-FUC
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
FUC
-
Alpha-L-Fucopyranose [Alpha-L-Fucose; 6-Deoxy-Alpha-L-Galactopyranose; l- Fucose; fucose]
Formula:
C
6
H
12
O
5
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(B)
15
15
1
0
0
0
0
0
1
0
FUC 2(B)
11
11
1
0
0
0
0
0
1
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-FUC
List of
interactions
NAG 1(B) to FUC 2(B)
