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PDBsum entry 2fcp
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Ligand/metal interactions
PDB id
2fcp
Ligand highlighted
GP1-GP4-KDO-GMH-
GPH-GLC-GLA-GLA-
KDO
Ligands
GP1-GP4-KDO-GMH-
GPH-GLC-GLA-GLA-
KDO
GP1 1(B) to KDO 9(B)
LIL
×2
LIL 803(A)
LIL 804(A)
AAE
AAE 805(A)
LIM
LIM 806(A)
EA2
EA2 807(A)
Metals
_NI
×2
NI 801(A)
NI 802(A)
Ligand
GP1-GP4-KDO-GMH-GPH-GLC-GLA-GLA-KDO
GP1
-
2-Amino-2-Deoxy-1-O-Phosphono-Alpha-D-Glucopyranose [Glucosamine 1-Phosphate; 1-O-Phosphono-Alpha-D- Glucosamine; 2-Amino-2-Deoxy-1-O-Phosphono-Alpha-D- Glucose; 2-Amino-2-Deoxy-1-O-Phosphono-D-Glucose; 2- Amino-2-Deoxy-1-O-Phosphono-Glucose]
Formula:
C
6
H
14
NO
8
P
GP4
-
2-Amino-2-Deoxy-4-O-Phosphono-Alpha-D-Glucopyranose [Glucosamine 4-Phosphate; n-Acetyl-4-O-Phosphono-Alpha- D-Glucosamine; 2-Amino-2-Deoxy-4-O-Phosphono-Alpha-D- Glucose; 2-Amino-2-Deoxy-4-O-Phosphono-D-Glucose; 2- Amino-2-Deoxy-4-O-Phosphono-Glucose]
Formula:
C
6
H
14
NO
8
P
KDO
-
3-Deoxy-Alpha-D-Manno-Oct-2-Ulopyranosonic acid [3-Deoxy-D-Manno-Oct-2-Ulopyranosonic acid; 2-Keto-3- Deoxy-D-Mannooctanoic acid; 3-Deoxy-Alpha-D-Manno-Oct- 2-Ulosonic acid; 3-Deoxy-D-Manno-Oct-2-Ulosonic acid; 3-Deoxy-Manno-Oct-2-Ulosonic acid]
Formula:
C
8
H
14
O
8
GMH
-
L-Glycero-Alpha-D-Manno-Heptopyranose [L-Glycero-Alpha-D-Manno-Heptose; l-Glycero-D-Manno- Heptose; l-Glycero-Manno-Heptose; l-Glycero-D-Manno- Heptopyranose]
Formula:
C
7
H
14
O
7
GPH
-
4-O-Phosphono-D-Glycero-Beta-D-Manno-Heptopyranose [4-O-Phosphono-D-Glycero-Beta-D-Manno-Heptose; 4-O- Phosphono-D-Glycero-D-Manno-Heptose; 4-O-Phosphono-D- Glycero-Manno-Heptose]
Formula:
C
7
H
15
O
10
P
GLC
-
Alpha-D-Glucopyranose [Alpha-D-Glucose; d-Glucose; glucose]
Formula:
C
6
H
12
O
6
GLA
-
Alpha-D-Galactopyranose [Alpha-D-Galactose; d-Galactose; galactose; alpha d- Galactose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
LIL 803(A)
32
32
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand GP1-GP4-KDO-GMH-GPH-GLC-GLA-GLA-KDO
List of
interactions
GP1 1(B) to KDO 9(B)
_NI
×2
