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PDBsum entry 2dvb
Go to PDB code:
Ligand/metal interactions
PDB id
2dvb
Ligand highlighted
NGA-GAL
Ligands
NGA-GAL
NGA 1(E) to GAL 2(E)
SO4
×4
SO4 1240(A)
GAL
×3
GAL 1239(B)
GAL 2239(C)
GAL 3239(D)
Metals
_CA
×4
CA 237(A)
_MN
×4
MN 238(A)
Ligand
NGA-GAL
NGA
-
2-Acetamido-2-Deoxy-Beta-D-Galactopyranose [N-Acetyl-Beta-D-Galactosamine; 2-Acetamido-2-Deoxy- Beta-D-Galactose; 2-Acetamido-2-Deoxy-D-Galactose; 2- Acetamido-2-Deoxy-Galactose; n-Acetyl-D-Galactosamine]
Formula:
C
8
H
15
NO
6
GAL
-
Beta-D-Galactopyranose [Beta-D-Galactose; d-Galactose; galactose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NGA 1(E)
15
15
0
0
0
0
0
0
1
0
GAL 2(E)
12
12
1
0
0
0
0
0
0
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NGA-GAL
List of
interactions
NGA 1(E) to GAL 2(E)
_CA
×4
_MN
×4
