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PDBsum entry 2bck
Go to PDB code:
Ligand/metal interactions
PDB id
2bck
2 instances of ligand highlighted
VAL-TYR-GLY-PHE-
VAL-ARG-ALA-CYS-
LEU
Ligands
VAL-TYR-GLY-PHE-
VAL-ARG-ALA-CYS-
LEU
×2
VAL 1(C) to LEU 9(C)
SO4
×8
SO4 301(A)
SO4 307(A)
SO4 308(A)
SO4 302(B)
SO4 303(B)
GOL
×4
GOL 309(A)
GOL 204(B)
Ligand
VAL-TYR-GLY-PHE-VAL-ARG-ALA-CYS-LEU
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
VAL 1(C)
8
8
1
1
Complete
Chiral checks - OK
TYR 2(C)
13
13
1
1
Complete
Chiral checks - OK
GLY 3(C)
5
-
-
-
Residue too small to validate
PHE 4(C)
12
12
1
1
Complete
Chiral checks - OK
VAL 5(C)
8
8
1
1
Complete
Chiral checks - OK
ARG 6(C)
12
12
1
1
Complete
Chiral checks - OK
ALA 7(C)
6
-
-
-
Residue too small to validate
CYS 8(C)
7
7
1
1
Complete
Chiral checks - OK
LEU 9(C)
9
9
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
VAL 1(C)
-
0
TYR 2(C)
-
0
GLY 3(C)
-
0
PHE 4(C)
O: OXT
1
VAL 5(C)
-
0
ARG 6(C)
-
0
ALA 7(C)
-
0
CYS 8(C)
O: OXT
1
LEU 9(C)
-
0
Additional Information
Validation carried out using
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3D Viewers:
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of interactions involving ligand VAL-TYR-GLY-PHE-VAL-ARG-ALA-CYS-LEU
List of
interactions
VAL 1(C) to LEU 9(C)
(also representing equivalent ligand VAL 1(F) to LEU 9(F) )
