Your browser does not support inline frames or is currently configured not to display inline frames. Content can be viewed at actual source page: inc/head.html
PDBsum entry 2aph
Go to PDB code:
Ligand/metal interactions
PDB id
2aph
2 instances of ligand highlighted
ALA-GMA-LYS-DAL-
DAL-NH2
Ligands
ALA-GMA-LYS-DAL-
DAL-NH2
×2
ALA 884(C) to NH2 889(C)
SO4
×2
SO4 900(A)
SO4 901(B)
AMU
×2
AMU 901(C)
Ligand
ALA-GMA-LYS-DAL-DAL-NH2
GMA
-
4-Amido-4-Carbamoyl-Butyric acid
Formula:
C
5
HNN
2
O
3
DAL
-
D-Alanine
Formula:
C
3
H
7
NO
2
NH2
-
Amino group
Formula:
HnN
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
AMU 883(C)
20
20
1
1
0
0
0
0
1
0
ALA 884(C)
6
-
-
-
-
-
-
-
-
-
GMA 885(C)
10
10
1
1
0
0
0
0
1
0
LYS 886(C)
10
10
1
1
0
0
0
0
0
0
DAL 887(C)
6
-
-
-
-
-
-
-
-
-
DAL 888(C)
6
-
-
-
-
-
-
-
-
-
NH2 889(C)
1
-
-
-
-
-
-
-
-
-
Advanced Analysis
Residue
Name Mismatches
Count
AMU 883(C)
-
0
ALA 884(C)
-
0
GMA 885(C)
OE1: OE2
1
LYS 886(C)
-
0
DAL 887(C)
-
0
DAL 888(C)
-
0
NH2 889(C)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
Use mouse to move/zoom
3D Viewers:
LIGPLOT
of interactions involving ligand ALA-GMA-LYS-DAL-DAL-NH2
List of
interactions
ALA 884(C) to NH2 889(C)
(also representing equivalent ligand ALA 995(D) to NH2 1000(D) )
