Your browser does not support inline frames or is currently configured not to display inline frames. Content can be viewed at actual source page: inc/head.html
PDBsum entry 1w8h
Go to PDB code:
Ligand/metal interactions
PDB id
1w8h
Ligand highlighted
NAG-GAL-NDG-FUC
Ligands
NAG-GAL-NDG-FUC
NAG 1(E) to FUC 4(E)
NAG-NDG-GAL-FUC
×2
NAG 1(F) to FUC 3(F)
NAG 1(G) to FUC 3(G)
NDG-NAG-GAL-FUC
NDG 1(H) to FUC 3(H)
SO4
×2
SO4 400(A)
SO4 401(A)
GOL
×3
GOL 614(A)
GOL 615(C)
GOL 616(D)
Metals
_CA
×8
CA 204(B)
CA 203(B)
CA 205(C)
CA 206(C)
CA 207(D)
CA 208(D)
Ligand
NAG-GAL-NDG-FUC
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
GAL
-
Beta-D-Galactopyranose [Beta-D-Galactose; d-Galactose; galactose]
Formula:
C
6
H
12
O
6
NDG
-
2-Acetamido-2-Deoxy-Alpha-D-Glucopyranose [N-Acetyl-Alpha-D-Glucosamine; 2-Acetamido-2-Deoxy- Alpha-D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2- Acetamido-2-Deoxy-Glucose; 2-(Acetylamino)-2-Deoxy-A- D-Glucopyranose]
Formula:
C
8
H
15
NO
6
FUC
-
Alpha-L-Fucopyranose [Alpha-L-Fucose; 6-Deoxy-Alpha-L-Galactopyranose; l- Fucose; fucose]
Formula:
C
6
H
12
O
5
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(E)
15
15
0
0
0
0
0
0
0
0
GAL 2(E)
12
12
1
0
0
0
0
0
0
0
NDG 3(E)
15
-
-
-
-
-
-
-
-
-
FUC 4(E)
11
11
1
0
0
0
0
0
0
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
Use mouse to move/zoom
3D Viewers:
LIGPLOT
of interactions involving ligand NAG-GAL-NDG-FUC
List of
interactions
NAG 1(E) to FUC 4(E)
_CA
×8
