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PDBsum entry 1vwj
Go to PDB code:
Ligand/metal interactions
PDB id
1vwj
2 instances of ligand highlighted
HIS-PRO-GLN-GLY-
PRO-PRO-CYS-LYS-
NH2
Ligands
HIS-PRO-GLN-GLY-
PRO-PRO-CYS-LYS-
NH2
×2
HIS 3(M) to NH2 10(M)
LEA
×2
LEA 2(M)
Ligand
HIS-PRO-GLN-GLY-PRO-PRO-CYS-LYS-NH2
-
Amino group
Formula:
HnN
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
CYS 1(M)
7
7
1
1
Complete
Chiral checks - OK
HIS 3(M)
11
11
1
1
Complete
Chiral checks - OK
PRO 4(M)
8
8
1
1
Complete
Chiral checks - OK
GLN 5(M)
10
10
1
1
Complete
Chiral checks - OK
GLY 6(M)
5
-
-
-
Residue too small to validate
PRO 7(M)
8
8
1
1
Complete
Chiral checks - OK
PRO 8(M)
8
8
1
1
Complete
Chiral checks - OK
LYS 9(M)
10
10
1
1
Complete
Chiral checks - OK
NH2 10(M)
1
-
-
-
Residue too small to validate
Advanced Analysis
Residue
Name Mismatches
Count
CYS 1(M)
O: OXT
1
HIS 3(M)
-
0
PRO 4(M)
-
0
GLN 5(M)
-
0
GLY 6(M)
-
0
PRO 7(M)
-
0
PRO 8(M)
-
0
LYS 9(M)
-
0
NH2 10(M)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Nothing to show in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand HIS-PRO-GLN-GLY-PRO-PRO-CYS-LYS-NH2
List of
interactions
HIS 3(M) to NH2 10(M)
(also representing equivalent ligand HIS 3(P) to NH2 10(P) )
