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PDBsum entry 1vbt
Go to PDB code:
Ligand/metal interactions
PDB id
1vbt
2 instances of ligand highlighted
ALA-ALT-PRO-PHE-
NIT
Ligands
ALA-ALT-PRO-PHE-
NIT
×2
ALA 1(C) to NIT 5(C)
Ligand
ALA-ALT-PRO-PHE-NIT
ALT
-
Thioalanine
Formula:
C
3
H
7
NOS
NIT
-
4-Nitroaniline [Paranitroaniline]
Formula:
C
6
H
6
N
2
O
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ALA 1(C)
6
-
-
-
Residue too small to validate
ALT 2(C)
6
-
-
-
Residue too small to validate
PRO 3(C)
8
8
1
1
Complete
Chiral checks - OK
PHE 4(C)
12
12
1
1
Complete
Chiral checks - OK
NIT 5(C)
10
10
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
ALA 1(C)
-
0
ALT 2(C)
-
0
PRO 3(C)
-
0
PHE 4(C)
O: OXT
1
NIT 5(C)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand ALA-ALT-PRO-PHE-NIT
List of
interactions
ALA 1(C) to NIT 5(C)
(also representing equivalent ligand ALA 1(D) to NIT 5(D) )
