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PDBsum entry 1vbs
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Ligand/metal interactions
PDB id
1vbs
Ligand highlighted
ALA-DAL-PRO-PHE-
NIT
Ligands
ALA-DAL-PRO-PHE-
NIT
ALA 2(B) to NIT 6(B)
Ligand
ALA-DAL-PRO-PHE-NIT
DAL
-
D-Alanine
Formula:
C
3
H
7
NO
2
NIT
-
4-Nitroaniline [Paranitroaniline]
Formula:
C
6
H
6
N
2
O
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ALA 2(B)
6
-
-
-
Residue too small to validate
DAL 3(B)
6
-
-
-
Residue too small to validate
PRO 4(B)
8
8
1
1
Complete
Chiral checks - OK
PHE 5(B)
12
12
1
1
Complete
Chiral checks - OK
NIT 6(B)
10
10
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
ALA 2(B)
-
0
DAL 3(B)
-
0
PRO 4(B)
-
0
PHE 5(B)
O: OXT
1
NIT 6(B)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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of interactions involving ligand ALA-DAL-PRO-PHE-NIT
List of
interactions
ALA 2(B) to NIT 6(B)
