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PDBsum entry 1v6d
Go to PDB code:
Ligand/metal interactions
PDB id
1v6d
Ligand highlighted
PRO-ASP-AIB-LEU-
AIB-LEU-ALA
Ligands
PRO-ASP-AIB-LEU-
AIB-LEU-ALA
PRO 1(B) to ALA 7(B)
ACT
ACT 390(A)
TBF
TBF 9(B)
NME
NME 8(B)
Metals
_CA
CA 1(A)
Ligand
PRO-ASP-AIB-LEU-AIB-LEU-ALA
-
Alpha-Aminoisobutyric acid
Formula:
C
4
H
9
NO
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
PRO 1(B)
8
8
1
1
Complete
Chiral checks - OK
ASP 2(B)
9
9
1
1
Complete
Chiral checks - OK
AIB 3(B)
7
7
1
1
Complete
Chiral checks - OK
LEU 4(B)
9
9
1
1
Complete
Chiral checks - OK
AIB 5(B)
7
7
1
1
Complete
Chiral checks - OK
LEU 6(B)
9
9
1
1
Complete
Chiral checks - OK
ALA 7(B)
6
-
-
-
Residue too small to validate
Advanced Analysis
Residue
Name Mismatches
Count
PRO 1(B)
-
0
ASP 2(B)
OD2: OD1
|
OD1: OD2
|
O: OXT
3
AIB 3(B)
O: OXT
1
LEU 4(B)
O: OXT
1
AIB 5(B)
O: OXT
1
LEU 6(B)
-
0
ALA 7(B)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand PRO-ASP-AIB-LEU-AIB-LEU-ALA
List of
interactions
PRO 1(B) to ALA 7(B)
_CA
